EQAsia Resources
In these pages, you will find educational and training resources that have been produced over the course of the EQAsia project. These include video tutorials for laboratory techniques, a Coursera course, and a collection of recorded webinars with accompanying training exercises. These resources cover a wide range of topics related to AMR surveillance, Whole Genome Sequencing (WGS), data analysis, laboratory skills and accreditations, quality management systems, and more.
Developing and providing training materials and technical support was central to the EQAsia programme and mission. EQAsia invested in capacity strengthening for laboratory personnel and laboratory systems across One Health sectors in order to strengthen critical AMR surveillance and response infrastructure, and to improve the quality of data that guides critical efforts to combat AMR.
Please note that the field of AMR surveillance and WGS is changing rapidly, and EQAsia will not update these educational materials after March 2026. Please ensure that you are accessing up-to-date materials.
Video Tutorials
See below video tutorials covering a variety of laboratory processes that are critical for AMR diagnostics and surveillance. These videos were produced by the EQAsia team, and we hope that they can be a tool to strengthen practical laboratory skills, build confidence, and increase success in laboratory diagnostics procedures.
See the videos:
- Performing Disk Diffusion
- How to determine the MIC using gradient strips
- How to do broth micro dilution (BMD)
- Antimicrobial Susceptibility Testing (AST): Troubleshooting and Quality Control.
Coursera Course: Antimicrobial resistance – Theory and Methods
This course covers essential topics related to AMR, providing fundamental definitions and an overview of antimicrobials, their use, and the emergence and spread of resistance. Gain insights into the concepts and significance of resistance spread, discover how bacteria become resistant, and explore the mechanisms involved. The course includes training in the methods for antimicrobial susceptibility testing (AST) and detecting specific resistance in microbiology laboratories, emphasizing the generation of high-quality results for various purposes.
Webinars
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Basics of Whole Genome Sequence Quality Control and Analysis: Session 1. 14 December 2023
Link to recording
Slides: Basics of Whole Genome Sequence Quality Control and Analysis Session 1 -
Basics of Whole Genome Sequence Quality Control and Analysis: Session 2. 1 February 2024
Link to recording
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Laboratory Audit Conduct. 22 March 2024
Link to recording
Slides: Laboratory audit conduct -
Detection of Vancomycin-resistant Enterococci (VRE). 28 March 2025
Slides: Detection of Vancomycin Resistant Enterococcus
Assignment: Assignment_Detection of Vancomycin Resistant Enterococcus
Answers: Answers to assignment_Detection of Vancomycin Resistant Enterococcus -
Equipment Management. 25 April 2025
Link to recording
Slides: Equipment management -
Salmonella serotyping. 18 July 2025
Link to recording
Slides: Salmonella serotyping
Lab slides: Salmonella serotyping – LAB -
Laboratory Personnel Management. 14 November 2025
Link to recording
Slides: Laboratory Personnel Management -
General Introduction to ISO Accreditation (Basic requirements of ISO 15189, ISO 17025, ISO 17043). 17 December 2025
Link to recording
Slides: General Intro to ISO Accreditation
SeqAsia Webinars and Exercise Materials
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From Sample to Sequence: wet-lab essentials for WGS. 6 May 2025
Link to recording
Slides: From sample to sequence wet-lab essentials for WGS -
Introduction to Bioinformatics. 3 June 2025
Link to recording
Slides: Intro to_bioinformatics -
Data Management. 10 June 2025
Link to recording
Slides: Data-management -
Introduction to sequencing. 11 June 2025
Link to recording
Slides: Introduction to Sequencing -
Quality Control of Raw Data. 17 June 2025
Link to recording
Slides: Quality Control of raw data -
CU Exclusive: Quality Control of Raw Data. 26 June 2025
Link to recording -
Bioinformatics Essentials. 17 July 2025
Link to recording
Slides: Bioinformatics_Essentials -
Speciation and Typing. 29 July 2025
Link to recording
Slides: Speciation and Typing -
Sequence QC and Genome Assembly. 30 July 2025
Link to recording
Slides: Sequence QC and Genome Assembly -
AMR and Virulence Gene Detection. 11 August 2025
Link to recording -
Introduction to Mini Simulated Exercise: 29 August 2025
Link to recording
Slides: Intro to MiniSIMEX
Exercise Document: SeqAsia Simulated Exercise document -
SeqAsia Tutorial: reporting genomic results on single isolates. 1 September 2025
Link to recording
Slides: Reporting genomic results on single isolates
Exercise slides: Reporting_practical_session -
Variant Calling and Phylogenomics. 29 September 2025
Link to recording
Slides: Variant Calling – SeqAsia -
EXERCISE, 6 October 2025
Link to recording
Slides: Variant calling_exercises -
Phylogenetics and Clustering. 30 September 2025
Link to recording
Slides: Phylogenetics_and_clustering -
Clustering. 13 October 2025
Link to recording
Slides: Clustering presentation -
CLUSTERING EXERCISE. 20 October 2025
Link to recording
Document: Clustering_Exercise -
From Data to Decisions: Making WGS Results Meaningful. 16 October 2025
Link to recording -
Integrating Metadata in Pathogen Genomics. 27 October 2025
Link to recording
Slides: Integrating Metadata in Pathogen Genomics -
Data Governance: Sharing, Ethics and Global Collaboration. 27 November 2025
Link to recording
Slides: Data Governance sharing, ethics and global collaboration -
Phylogenetic Analysis Exercise. 15 December 2025
Link to recording -
Reporting Comparative Genomic Data. 2 February 2026
Link to recording
Slides: Reporting comparative genomic data -
Aggregate Reporting – Exercise; Antibiograms. 23 February 2026
Link to recording
Slides: Aggregate Reporting - Exercise; Antibiograms
National External Quality Assessment (NEQA) Pilot Training Modules
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EQAsia: National EQA Provision Pilots (NEQAs) Module 1: Introduction to NEQA and SOP Development, 27 September 2024
Recorded webinar
Slides: NEQA Module 1 -
NEQA Module 2: Introduction to NEQA and SOP development, 18 April 2024
Recorded webinar
Slides: NEQA Module 2 -
NEQA Module 3: NEQA panel design and composition, 25 April 2024
Recorded Webinar
Slides: NEQA Module 3 -
NEQA Module 4: SOP Development, 15 May 2024
Recorded Webinar
Slides: NEQA Module 4