Workshop at DTU, Denmark May 2026

MATERIAL FOR THE BREAK-OUT SESSION

Overview of sampling, pre-enrichment and laboratory analysis of samples for EFSA Aquaculture Baseline Survey (PDF document, 0.5 MB)
Laboratory Protocol, Susceptibility testing by broth microdilution (MIC) of bacteria from aquaculture animals (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Aeromonas from finfish (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Escherichia coli and Klebsiella pneumoniae from mussels (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of ESBL-, AmpC- and carbapenemase-producing E. coli from mussels (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Enterococcus faecalis and Enterococcus faecium from mussels (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Vibrio parahaemolyticus and V. alginolyticus from mussels (PDF document, 0.5 MB)
 

PRESENTATIONS

Update from the EURL-AMR

By Rene Hendriksen, EURL-AMR
(PDF document, X.X MB) (link pending to be added)

Update from EFSA incl. EUSR

By Beatriz Guerra, European Food Safety Authority (EFSA)
(PDF document, X.X MB) (link pending to be added)

Update from the EU Commission

By Martial Plantady, European Commission) 
(PDF document, X.X MB) (link pending to be added)

Carba-R-ales project status

By Carmen Espinosa-Gongora, EURL-AMR and Beatriz Guerra, EFSA
(PDF document, X.X MB) (link pending to be added)

CPE finding in the Netherlands

By Kees Veldman, the Netherlands
(PDF document, X.X MB) (link pending to be added)

Identification of blaNDM-5-positive Escherichia coli in two pig farms from Ireland

By Rosemarie Slowey, Ireland
(PDF document, X.X MB) (link pending to be added)

The first case of carbapenem-resistant Escherichia coli in the framework of 2020/1729 testing in Poland

By Dariusz Wasyl, Poland
(PDF document, X.X MB) (link pending to be added)

Framing: what “WGS capacity” means for NRLs in 2026–2027

By Rene Hendriksen, EURL-AMR
(PDF document, X.X MB) (link pending to be added)

EURL-AMR WGS pipelines overview: how can we support MS/NRLs

By João Cardoso, EURL-AMR) 
(PDF document, X.X MB) (link pending to be added)

WGS accreditation: experience & practical pitfalls

By Hanna Skarin and Bo Segerman, EURL Campylobacter) 
(PDF document, X.X MB) (link pending to be added)

Inter-EURL WG on NGS resources: current activities and support landscape

By Valeria Michelacci, EURL E. coli) 
(PDF document, X.X MB) (link pending to be added)

NRL readiness & gaps

By Rene Hendriksen & Joana Mourão, EURL-AMR
(PDF document, X.X MB) (link pending to be added)

Introducing the GPAP project

By Rene Hendriksen, EURL-AMR
(PDF document, X.X MB) (link pending to be added)

Introducing the GenPat-VetLab platform

By Adriano Di Pasquale, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo
(PDF document, X.X MB) (link pending to be added)

Genomic PT (GPT) 2021–2025: summary using the new GPT analysis pipeline

By João Cardoso, EURL-AMR) 
(PDF document, X.X MB) (link pending to be added)

Interactive training: How to interpret the Genomic PT report

By Joana Mourão, EURL-AMR
(PDF document, X.X MB) (link pending to be added)

Aquaculture Baseline study. Introduction to the project, protocols and upcoming activities

By Dafni K. Paspaliari and Jette Kjeldgaard, EURL-AMR
(PDF document, X.X MB) (link pending to be added)

Occurrence of MRSA and other staphylococci on broilers and their environment - the potential role of Ionophore Coccidiostats?

By Michel Rapallini, Wageningen
(PDF document, X.X MB) (link pending to be added)

WateResist 

By Ana Allende, CEBAS-CSIC and Beatriz Guerra, EFSA
(PDF document, X.X MB) (link pending to be added)

EC Mandate AMR MON Tech Specs for future legislation period and short update of the MRSA baseline study

By Beatriz Guerra, EFSA
(PDF document, X.X MB) (link pending to be added)