Workshop at DTU, Denmark May 2026

MATERIAL FOR THE BREAK-OUT SESSION

Overview of sampling, pre-enrichment and laboratory analysis of samples for EFSA Aquaculture Baseline Survey (PDF document, 0.5 MB)
Laboratory Protocol, Susceptibility testing by broth microdilution (MIC) of bacteria from aquaculture animals (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Aeromonas from finfish (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Escherichia coli and Klebsiella pneumoniae from mussels (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of ESBL-, AmpC- and carbapenemase-producing E. coli from mussels (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Enterococcus faecalis and Enterococcus faecium from mussels (PDF document, 0.5 MB)
Laboratory Protocol, Isolation of Vibrio parahaemolyticus and V. alginolyticus from mussels (PDF document, 0.5 MB)
 

PRESENTATIONS

Update from the EURL-AMR

By Rene Hendriksen, EURL-AMR
(PDF document, 1.5 MB)

Update from EFSA incl. EUSR

By Beatriz Guerra, European Food Safety Authority (EFSA)
(PDF document, 5.8 MB)

Update from the EU Commission

By Martial Plantady, European Commission) 
(PDF document, 0.2 MB)

Carba-R-ales project status

By Carmen Espinosa-Gongora, EURL-AMR and Beatriz Guerra, EFSA
(PDF document, 1.3 MB)

EURL-AMR WGS pipelines overview: how can we support MS/NRLs

By João Cardoso, EURL-AMR) 
(PDF document, 4.5 MB)

WGS accreditation: experience & practical pitfalls

By Hanna Skarin and Bo Segerman, EURL Campylobacter) 
(PDF document, 1.3 MB)

Inter-EURL WG on NGS resources: current activities and support landscape

By Valeria Michelacci, EURL E. coli) 
(PDF document, 1.3 MB)

Introducing the GPAP project

By Henrik Wegener, DTU National Food Institute
(PDF document, 5.8 MB)

Introducing the GenPat-VetLab platform

By Adriano Di Pasquale, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo
(PDF document, 2.9 MB)

Aquaculture Baseline study. Introduction to the project, protocols and upcoming activities

By Dafni K. Paspaliari and Jette Kjeldgaard, EURL-AMR
(PDF document, 1.3 MB)

Occurrence of MRSA and other staphylococci on broilers and their environment - the potential role of Ionophore Coccidiostats?

By Michel Rapallini, Wageningen
(PDF document, 3.2 MB)

WateResist 

By Ana Allende, CEBAS-CSIC and Beatriz Guerra, EFSA
(PDF document, 7.0 MB)

EC Mandate AMR MON Tech Specs for future legislation period and short update of the MRSA baseline study

By Beatriz Guerra, EFSA
(PDF document, 1.6 MB)