Projects from the Genomic Epidemiology Research Group

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The Global Dynamics and Concurrance of Sewage Plasmidome

Teudt, Frederik; Aarestrup, Frank Møller; Otani, Saria

Type: PhD    |     Project status: Active

2019-2022

Characterisation and optimisation of Escherichia coli cell factories for large-scale industrial production of Human Milk Oligosaccharides

Gecse, Greta; Kilstrup, Mogens; Johanson, Ted; Pamp, Sünje Johanna; Pedersen, Margit

Type: PhD    |     Project status: Active

2019-2022

Transmission of Antimicrobial resistance between the animal and human reservoir with a focus on pig production

Che, Meiyao; Jensen, Lars Bogø; Birk, Tina; Hendriksen, Rene S.

Type: PhD    |     Project status: Active

2019-2021

Udvikling af tids-effektiv DNA-baseret metode til Salmonella serotypning

Aarestrup, Frank Møller; Kjeldgaard, Jette Sejer; Seyfarth, Anne Mette; Otani, Saria; Kaas, Rolf Sommer; Skiby, Jeffrey Edward

Type: Research    |     Project status: Active

2019-2019

Machine learning of antimicrobial resistance

Aytan, Derya; Aarestrup, Frank Møller; Rasmussen, Simon; Lund, Ole

Type: PhD    |     Project status: Active

2018-2021

Importance of mobile elements for global transmission of antimicrobial resistance

Johansson, Markus Hans Kristofer; Petersen, Thomas Nordahl; Aarestrup, Frank Møller

Type: PhD    |     Project status: Active

2018-2021

Human microbiome interaction

Jespersen, Marie Louise; Nielsen, Henrik Bjørn; Aarestrup, Frank Møller; Rasmussen, Simon

Type: PhD    |     Project status: Active

2018-2022

Infectious Diseases and Whole Genome Sequencing

Rebelo, Ana Rita Bastos; Aarestrup, Frank Møller; Bortolaia, Valeria; Leekitcharoenphon, Pimlapas

Type: PhD    |     Project status: Active

2018-2021

Biokontrol af ESBL og colistin resistente E. coli og Salmonella i primærproduktion

Bortolaia, Valeria

Type: Research    |     Project status: Finished

2018-2018

Indagine sulla presenza di enterobatteri multi-resistenti in carne venduta al dettaglio in Puglia e Basilicata

Bortolaia, Valeria

Type: Research    |     Project status: Active

2018-2020

Risk and Disease burden of Antimicrobial Resistance

Ribeiro Duarte, Ana Sofia; Hald, Tine

Type: Research    |     Project status: Active

2018-2019

Surveillance of Network Effects in Antimicrobial Resistance Genes

Röder, Timo; Aarestrup, Frank Møller; Petersen, Thomas Nordahl

Type: PhD    |     Project status: Active

2018-2020

PROVIDE - Protein valorization through informatics, hydrolysis, and separation

Hansen, Egon Bech; Bang-Berthelsen, Iben ; Jacobsen, Charlotte; Holdt, Susan Løvstad; García Moreno, Pedro Jesús; Lund, Ole; Marcatili, Paolo; Hyldig, Grethe; Sørensen, Rie

Type: Research    |     Project status: Active

2017-2021

Evergreen methods for phylogeny

Szarvas, Judit; Aarestrup, Frank Møller; Lund, Ole

Type: PhD    |     Project status: Active

2017-2020

Fast-tracking the identification of safe and effective probiotic bacteria by in sillico prediction of bacterial genomic features

Tang Karlsen, Signe; Bælum, Jacob; Henderson, Gemma; Lund, Ole Superv.: Henderson, Gemma

Type: PhD    |     Project status: Active

2017-2020

Typing and pheno typing based on direct sequencing of samples

Clausen, Philip Thomas Lanken Conradsen; Aarestrup, Frank Møller; Lund, Ole

Type: PhD    |     Project status: Active

2017-2020

Evaluate and Establish Surveillance program of Salmonella in Imported and domestic Poultry Meat in Jordan

Vigre, Håkan; Alali, Walid; Hantash, Tariq Superv.: Alali, Walid

Type: PhD    |     Project status: Active

2017-2020

Bekæmpelse af ESBL producerende, colistin og multiresistente Salmonella og E. coli

Bortolaia, Valeria

Type: Research    |     Project status: Finished

2016-2016

Comparison of ADDs used in VetStat with primary data on usage doses obtained at visits in 20 Danish pig herds

Hald, Tine

Type: Research    |     Project status: Finished

2016-2017

COMPARE WG 1, Task 1.2: Development of a novel approach for food chain risk assessment based on NGS data

Hald, Tine

Type: Research    |     Project status: Finished

2016-2018

Establishing Next Generation sequencing Ability for Genomic analysis in Europe.

Hendriksen, Rene S.

Type: Research    |     Project status: Finished

2016-2018

Metagenomic Approaches for Determining the Structure and Function of Complex Microbiomes

Kirstahler, Philipp; Aarestrup, Frank Møller; Pamp, Sünje Johanna; Lund, Ole

Type: PhD    |     Project status: Active

2016-2020

Tools for source atribution based on ngs data

Munck, Nanna Sophia Mucha; Hald, Tine; de Knegt, Leonardo; Leekitcharoenphon, Pimlapas; Lund, Ole; Mughini-Gras, Lapo; Sandberg, Marianne Examiner: Mughini-Gras, Lapo; Sandberg, Marianne

Type: PhD    |     Project status: Finished

2015-2019

Detection of Pathogens and Antimicrobial Resistance in Microbiomes

Poulsen, Casper Sahl; Aarestrup, Frank Møller; Kaas, Rolf Sommer; Pamp, Sünje Johanna; Vigre, Håkan; Gilbert, M. Thomas P.; Höper, Dirk Examiner: Gilbert, M. Thomas P.; Höper, Dirk

Type: PhD    |     Project status: Finished

2015-2019

Interactions Between the Microbiome and Host Immune System

Masche, Anna Cäcilia; Pamp, Sünje Johanna; Aarestrup, Frank Møller; Müller, Klaus Gottlob; Licht, Tine Rask; Andersen, Paal Skytt; van den Brink, Marcel; Lund, Ole Superv.: Müller, Klaus Gottlob
Examiner: Andersen, Paal Skytt; van den Brink, Marcel

Type: PhD    |     Project status: Finished

2015-2019

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https://www.food.dtu.dk/english/research/genomic-epidemiology/projects
16 OCTOBER 2019