Publikationer fra forskningsgruppen for Mikrobiel bioteknologi og bioraffinering

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2019
 

Allergenicity and cross-reactivity of different variants of the peanut allergen Ara H 2

van de Velde, Anniek ; Bang-Berthelsen, Claus Heiner ; Sancho Vega, Ana Isabel ; Mackie, A. ; Bøgh, Katrine Lindholm
in: Allergy, vol: 74, pages: 108-108
Presented at:
EAACI 2019

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    År: 2019

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A splice-site variant in the lncRNA gene RP1-140A9.1 cosegregates in the large Volkmann cataract family

Eiberg, Hans ; Mikkelsen, Annemette F. ; Bak, Mads ; Tommerup, Niels ; Lund, Allan M. ; Wenzel, Anne ; Sabarinathan, Radhakrishnan ; Gorodkin, Jan ; Bang-Berthelsen, Claus Heiner ; Hansen, Lars
in: Molecular Vision, vol: 25, pages: 1-11

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019

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Development of a novel, robust and cost-efficient process for valorizing dairy waste exemplified by ethanol production

Shen, Jing ; Chen, Jun ; Jensen, Peter Ruhdal ; Solem, Christian
in: Microbial Cell Factories, vol: 18

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1186/s12934-019-1091-3

 

Examining development of the entrepreneurial mind-set in engineering students

Hobley, Timothy John ; Rootzén, Helle ; Andersson, Pernille Hammar
part of: Proceedings of the 46th SEFI Annual Conference 2018: Creativity, Innovation and Entrepreneurship for Engineering Education, pages: 848-855, 2019, European Society for Engineering Education (SEFI)
Presented at:
46th SEFI Annual Conference 2018

Type: Article in proceedings (Peer reviewed)

Status: Published     |    År: 2019

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Genetics of Lactococci

Gaudu, Philippe ; Yamamoto, Yuji ; Jensen, Peter Ruhdal ; Hammer, Karin ; Lechardeur, Delphine ; Gruss, Alexandra
in: Microbiology Spectrum, vol: 7, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1128/microbiolspec.GPP3-0035-2018

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Harnessing biocompatible chemistry for developing improved and novel microbial cell factories

Liu, Jian-Ming ; Solem, Christian ; Jensen, Peter Ruhdal
in: Microbial Biotechnology

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    År: 2019     |    DOI: https://doi.org/10.1111/1751-7915.13472

 

Lipid Nanoparticles for Delivery of Therapeutic RNA Oligonucleotides

Moss, Keith Henry ; Popova, Petya ; Hadrup, Sine Reker ; Astakhova, Kira ; Taskova, Maria
in: Molecular Pharmaceutics, vol: 16, issue: 6, pages: 2265-2277

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1021/acs.molpharmaceut.8b01290

 

Omics based comparative analysis of putative Mobile Genetic Elements in Lactococcus lactis

Andersen, Joakim Mark ; Pedersen, Christine Møller ; Bang-Berthelsen, Claus Heiner
in: FEMS Microbiology Letters, vol: 366, issue: 9

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1093/femsle/fnz102

 

Processing of brewing by-products to give food ingredient streams

Bjerregaard, Matias Falk ; Charalampidis, Angelos ; Frøding, Rasmus ; Shetty, Radhakrishna ; Pastell, Helena ; Jacobsen, Charlotte ; Zhuang, Shiwen ; Pinelo, Manuel ; Hansen, Preben Bøje ; Hobley, Timothy John
in: European Food Research and Technology, vol: 245, issue: 3, pages: 545-558

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1007/s00217-018-03224-6

 

Sweet As Sugar-Efficient Conversion of Lactose into Sweet Sugars Using a Novel Whole-Cell Catalyst

Shen, Jing ; Chen, Jun ; Jensen, Peter Ruhdal ; Solem, Christian
in: Journal of Agricultural and Food Chemistry, vol: 67, issue: 22, pages: 6257-6262

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1021/acs.jafc.9b01529

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Systems Biology – A Guide for Understanding and Developing Improved Strains of Lactic Acid Bacteria

Liu, Jianming ; Chan, Siu Hung Joshua ; Chen, Jun ; Solem, Christian ; Jensen, Peter Ruhdal
in: Frontiers in Microbiology, vol: 10

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.3389/fmicb.2019.00876

 

The SPI-19 encoded type-six secretion-systems (T6SS) of Salmonella enterica serovars Gallinarum and Dublin play different roles during infection

Schroll, Casper ; Huang, Kaisong ; Ahmed, Shahana ; Kristensen, Bodil M. ; Pors, Susanne Elisabeth ; Jelsbak, Lotte ; Lemire, Sebastien ; Thomsen, Line E. ; Christensen, Jens Peter ; Jensen, Peter R. ; Olsen, John E.
in: Veterinary Microbiology, vol: 230, pages: 23-31

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1016/j.vetmic.2019.01.006

2018
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Alterations in the transcription factors GntR1 and RamA enhance the growth and central metabolism of Corynebacterium glutamicum

Wang, Zhihao ; Liu, Jianming ; Chen, Lin ; Zeng, An-Ping ; Solem, Christian ; Jensen, Peter Ruhdal
in: Metabolic Engineering, vol: 48, pages: 1-12

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1016/j.ymben.2018.05.004

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Droplet-based microfluidics as a future tool for strain improvement in lactic acid bacteria

Chen, Jun ; Vestergaard, Mike ; Shen, Jing ; Solem, Christian ; Dufva, Martin ; Jensen, Peter Ruhdal
in: FEMS Microbiology Letters, vol: 23, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1093/femsle/fny258

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Early metastatic colorectal cancers show increased tissue expression of miR-17/92 cluster members in the invasive tumor front

Jepsen, Rikke Karlin ; Novotny, Guy Wayne ; Klarskov, Louise Laurberg ; Bang-Bertelsen, Claus Heiner ; Haakansson, Ida Trondhjem ; Hansen, Anker ; Christensen, Ib Jarle ; Ass, Lene Buhl Riis ; Høgdall, Estrid
in: Human Pathology, vol: 80, pages: 231-238

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1016/j.humpath.2018.05.027

 

Improved Enantioselectivity of Subtilisin Carlsberg towards Secondary Alcohols by Protein Engineering

Dorau, Robin ; Görbe, Tamas ; Svedendahl Humble, Maria
in: Chembiochem, vol: 19, issue: 4, pages: 338-346

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1002/cbic.201700408

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Inactivation of TCA cycle enhances Staphylococcus aureus persister cell formation in stationary phase

Wang, Ying ; Bojer, Martin Saxtorph ; George, Shilpa Elizabeth ; Wang, Zhihao ; Jensen, Peter Ruhdal ; Wolz, Christiane ; Ingmer, Hanne
in: Scientific Reports, vol: 8, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1038/s41598-018-29123-0

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Magnetic hydrophobic-charge induction adsorbents for the recovery of immunoglobulins from antiserum feedstocks by high-gradient magnetic fishing

Gomes, Cláudia Sofia Goncalves ; Fashina, Adedayo ; Fernández-Castané, Alfred ; Overton, Timothy W ; Hobley, Timothy John ; Theodosiou, Eirini ; Thomas, Owen R. T.
in: Journal of Chemical Technology and Biotechnology, vol: 93, issue: 7, pages: 1901-1915

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1002/jctb.5599

 

Metabolic engineering Corynebacterium glutamic

Shen, Jing

Type: Ph.D. thesis

Status: Published     |    År: 2018

 

Omics based comparative analysis of Mobile Genetic Elements inLactococcus lactis

Andersen, Joakim Mark ; Pedersen, Christine Møller ; Bang-Berthelsen, Claus Heiner
part of: Sustain Conference 2018, 2018, Technical University of Denmark, Lyngby, Denmark
Presented at:
Sustain conference 2018: Creating Technology for a Sustainable Society

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2018

 

Protein from green biomass as a food resource

Nørgaard, Daniel Stender ; Stærmose, Mikkel Duvier ; Jensen, Peter Ruhdal
part of: Sustain Conference 2018, 2018, Technical University of Denmark, Lyngby, Denmark
Presented at:
Sustain conference 2018: Creating Technology for a Sustainable Society

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2018

2017
 

ROLLER FILTRATION APPARATUS

Stubbe, Peter ; Bøje Hansen, Preben
Patent no.: WO2017202934, Date: 2017-11-30

Type: Patent

Status: Published     |    År: 2017

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A bacterial cell factory for efficient production of ethanol from whey

Jensen, Peter Ruhdal ; Liu, Jianming ; Solem, Christian ; Dantoft, Shruti Harnal
Patent no.: WO2017144672, Date: 2017-08-31

Type: Patent

Status: Published     |    År: 2017

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High-level production of diacetyl in a metabolically engineered lactic acid bacterium

Solem, Christian ; Jensen, Peter Ruhdal ; Liu, Jianming
Patent no.: WO2017060455, Date: 2017-04-13

Type: Patent

Status: Published     |    År: 2017

 

A novel genetic tool for metabolic optimization of Corynebacterium glutamicum: efficient and repetitive chromosomal integration of synthetic promoter-driven expression libraries

Shen, Jing ; Chen, Jun ; Jensen, Peter Ruhdal ; Solem, Christian
in: Applied Microbiology and Biotechnology, vol: 101, issue: 11, pages: 4737-4746

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1007/s00253-017-8222-8

 

Brewing with 100 % unmalted grains: barley, wheat, oat and rye

Zhuang, Shiwen ; Shetty, Radhakrishna ; Hansen, Mikkel ; Fromberg, Arvid ; Hansen, Preben Bøje ; Hobley, Timothy John
in: European Food Research and Technology, vol: 243, issue: 3, pages: 447-454

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1007/s00217-016-2758-1

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Butanol is cytotoxic to Lactococcus lactis while ethanol and hexanol are cytostatic

Hviid, Anne-Mette Meisner ; Jensen, Peter Ruhdal ; Kilstrup, Mogens
in: Microbiology, vol: 163, pages: 453-461

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1099/mic.0.000441

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Discovery, cloning and characterisation of proline specific prolyl endopeptidase, a gluten degrading thermo-stable enzyme from Sphaerobacter thermophiles

Shetty, Radhakrishna ; Vestergaard, Mike ; Jessen, Flemming ; Hägglund, Per ; Knorr, Verena ; Koehler, Peter ; Prakash, H.S. ; Hobley, Timothy John
in: Enzyme and Microbial Technology, vol: 107, pages: 57-63

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1016/j.enzmictec.2017.08.002

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Effects of Added Enzymes on Sorted, Unsorted and Sorted-Out Barley: A Model Study on Realtime Viscosity and Process Potentials Using Rapid Visco Analyser

Shetty, Radhakrishna ; Zhuang, Shiwen ; Olsen, Rasmus Lyngsø ; Hansen, Preben Bøje ; Hobley, Timothy John
in: Journal of Cereal Science, vol: 77, pages: 141-146

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1016/j.jcs.2017.07.018

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Engineering Lactococcus lactis into a cell factory for production of butanol isomers

Andersen, Joakim Mark ; Mar, Mette Jurlander ; Kandasamy, Vijayalakshmi ; Liu, Jianming ; Brock-Nannestad, Theis ; Solem, Christian ; Jensen, Peter Ruhdal
part of: Book of Abstracts Sustain 2017, 2017, Technical University of Denmark, Kgs. Lyngby, Denmark
Presented at:
Sustain 2017

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2017

 

How to foster a High-Tech entrepreneurial mind-set – A multidisciplinary engineering course for Bachelor students

Rootzén, Helle ; Berg, Rolf Henrik ; Hobley, Timothy John ; Andersson, Pernille Hammar ; Yoshinaka, Yutaka ; Jensen, Lotte Bjerregaard
Presented at:
45th Annual Conference of the European Society for Engineering Education, SEFI 2017

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2017

 

Lipid Biotechnology and Biochemistry

Anankanbil, Sampson ; Suo, Fan ; Jensen, Peter Ruhdal ; Guo, Zheng
part of: Lipid Biotechnology and Biochemistry, pages: 779-824, 2017, CRC Press, Boca Raton

Type: Book chapter (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1201/9781315151854-32

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Protein from green biomass as a food resource

Nørgaard, Daniel Stender ; Duvier Stærmose, Mikkel ; Bang-Berthelsen, Claus Heiner ; Jensen, Peter Ruhdal
part of: Book of Abstracts Sustain 2017, 2017, Technical University of Denmark, Kgs. Lyngby, Denmark
Presented at:
Sustain 2017

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2017

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Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli

Charbon, Godefroid ; Campion, Christopher ; Chan, Siu Hung Joshua ; Bjørn, Louise ; Weimann, Allan ; da Silva, Luis ; Jensen, Peter Ruhdal ; Løbner-Olesen, Anders
in: P L o S Genetics, vol: 13, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1371/journal.pgen.1006590

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Survey of 800+ datasets from human tissue and body fluid reveals XenomiRs are likely artifacts

Kang, Wenjing ; Bang-Berthelsen, Claus Heiner ; Holm, Anja ; Houben, Anna ; Muller, Anne Holt ; Thymann, Thomas ; Pociot, Flemming ; Estivill, Xavier ; Riemer Friedländer, Marc
in: R N A, vol: 23, pages: 433-445

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1261/rna.059725.116

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The identification and functional annotation of RNA structures conserved in vertebrates

Seemann, Ernst Stefan ; Mirza, Aashiq Hussain ; Hansen, Claus ; Bang-Berthelsen, Claus Heiner ; Garde, Christian ; Christensen-Dalsgaard, Mikkel ; Torarinsson, Elfar ; Workman, Christopher ; Pociot, Flemming ; Nielsen, Henrik ; Tommerup, Niels ; Ruzzo, Walter L. ; Gorodkin, Jan
in: Genome Research, vol: 27, pages: 1371-1383

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1101/gr.208652.116

2016
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Micro-organism for the production of stereo-specific s, s-2,3-butanediol

Solem, Christian ; Jensen, Peter Ruhdal ; Chen, Jun ; Liu, Jianming
Patent no.: WO2016097268, Date: 2016-06-23

Type: Patent

Status: Published     |    År: 2016

 

Acetoin and 2,3 butanediol isomers synthesis in metabolically engineeredLactococcus lactis

Kandasamy, Vijayalakshmi ; Liu, Jianming ; Dantoft, Shruti Harnal ; Solem, Christian ; Jensen, Peter Ruhdal
Presented at:
Sustain-ATV Conference 2016

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016

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An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates

Hansen, Morten Ejby ; Fredslund, Folmer ; Andersen, Joakim Mark ; Žagar, Andreja Vujičić ; Henriksen, Jonas Rosager ; Andresen, Thomas Lars ; Svensson, Birte ; Slotboom, Dirk Jan ; Abou Hachem, Maher
in: Journal of Biological Chemistry, vol: 291, issue: 38, pages: 20220-20231

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1074/jbc.M116.746529

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A novel cell factory for efficient production of ethanol from dairy waste

Liu, Jianming ; Dantoft, Shruti Harnal ; Würtz, Anders ; Jensen, Peter Ruhdal ; Solem, Christian
in: Biotechnology for Biofuels, vol: 9, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1186/s13068-016-0448-7

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A Systematic Comparison of Purification and Normalization Protocols for Quantitative MicroRNA Expressional Profiling in Insulin-Producing Cells

Vestergaard, Anna Lindelov ; Blankestijn, Maaike ; Stahl, Jonathan Lucien ; Pallesen, Emil Marek Heymans ; Bang-Berthelsen, Claus Heiner ; Pociot, Flemming ; Novotny, Guy Wayne ; Lundh, Morten ; Mandrup-Poulsen, Thomas
in: International Journal of Molecular Sciences , vol: 17, issue: 6

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.3390/ijms17060896

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Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein

Vestergaard, Mike ; Chan, Siu Hung Joshua ; Jensen, Peter Ruhdal
in: Scientific Reports, vol: 6

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1038/srep36421

 

Combining metabolic engineering and biocompatible chemistry for efficient production of food ingredients

Liu, Jianming ; Solem, Christian ; Jensen, Peter Ruhdal
Presented at:
Sustain-ATV Conference 2016

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016

 

Combining metabolic engineering and biocompatible chemistry for high-yield production of homo-diacetyl and homo-(S,S)-2,3-butanediol

Liu, Jianming ; Chan, Siu Hung Joshua ; Brock-Nannestad, Theis ; Chen, Jun ; Lee, Sang Yup ; Solem, Christian ; Jensen, Peter Ruhdal
in: Metabolic Engineering, vol: 36, pages: 57-67

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1016/j.ymben.2016.02.008

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Draft Genome Sequence of Hymenobacter sp. Strain AT01-02, Isolated from a Surface Soil Sample in the Atacama Desert, Chile

Hansen, Anders Cai Holm ; Paulino-Lima, Ivan Glaucio ; Fujishima, Kosuke ; Rothschild, Lynn Justine ; Jensen, Peter Ruhdal
in: Genome Announcements, vol: 4, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1128/genomeA.01701-15

 

Elucidation of the regulatory role of the fructose operon reveals a novel target for enhancing the NADPH supply in Corynebacterium glutamicum

Wang, Zhihao ; Chan, Siu Hung Joshua ; Sudarsan, Suresh ; Blank, Lars M. ; Jensen, Peter Ruhdal ; Solem, Christian
in: Metabolic Engineering, vol: 38, pages: 344-357

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1016/j.ymben.2016.08.004

 

GLP-1 Induces Barrier Protective Expression in Brunner's Glands and Regulates Colonic Inflammation

Bang-Berthelsen, Claus Heiner ; Holm, Thomas L. ; Pyke, Charles ; Simonsen, Lotte ; Sokilde, Rolf ; Pociot, Flemming ; Heller, R. Scott ; Folkersen, Lasse ; Kvist, Peter H. ; Jackerott, Malene ; Fleckner, Jan ; Vilien, Mogens ; Knudsen, Lotte B. ; Heding, Anders ; Frederiksen, Klaus S.
in: Inflammatory Bowel Diseases, vol: 22, issue: 9, pages: 2078-2097

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1097/MIB.0000000000000847

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Integrating biocompatible chemistry and manipulating cofactor partitioning in metabolically engineeredLactococcus lactisfor fermentative production of (3S)-acetoin

Liu, Jianming ; Solem, Christian ; Jensen, Peter Ruhdal
in: Biotechnology and Bioengineering, vol: 113, issue: 12, pages: 2744-2748

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1002/bit.26038

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Linking Hydrolysis Performance to Trichoderma reesei Cellulolytic Enzyme Profile

Lehmann, Linda Olkjær ; Petersen, Nanna ; I. Jørgensen, Christian ; Olsson, Lisbeth ; Stocks, Stuart M. ; Jørgensen, Henrik S. ; Hobley, Timothy John
in: Biotechnology and Bioengineering, vol: 113, issue: 5, pages: 1001-1010

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1002/bit.25871

 

Magnetosome production and functionalization

Anyaogu, Diana Chinyere ; Zhuang, Shiwen ; Mortensen, Uffe Hasbro ; Hobley, Timothy John
Presented at:
Sustain-ATV Conference 2016

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016

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Microbial population heterogeneity versus bioreactor heterogeneity: evaluation of Redox Sensor Green as an exogenous metabolic biosensor

Baert, Jonathan ; Delepierre, Anissa ; Telek, Samuel ; Fickers, Patrick ; Toye, Dominique ; Delamotte, Anne ; Lara, Alvaro R. ; Jaén, Karim E. ; Gosset, Guillermo ; Jensen, Peter Ruhdal ; Delvigne, Frank
in: Engineering in Life Sciences (Online), vol: 16, issue: 7, pages: 643-651

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1002/elsc.201500149

 

MicroRNAs as regulators of beta-cell function and dysfunction

Osmai, Mirwais ; Osmai, Yama ; Bang-Berthelsen, Claus Heiner ; Pallesen, Emil M. H. ; Vestergaard, Anna L. ; Novotny, Guy W. ; Pociot, Flemming ; Mandrup-Poulsen, Thomas
in: Diabetes - Metabolism: Research and Reviews (Print Edition), vol: 32, issue: 4, pages: 334-349

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1002/dmrr.2719

 

Stimulation of acetoin production in metabolically engineered Lactococcus lactis by increasing ATP demand

Liu, Jianming ; Kandasamy, Vijayalakshmi ; Würtz, Anders ; Jensen, Peter Ruhdal ; Solem, Christian
in: Applied Microbiology and Biotechnology, vol: 100, issue: 2, pages: 9509-9517

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2016     |    DOI: https://doi.org/10.1007/s00253-016-7687-1

 

The effect of added enzymes on process potentials derived from different qualities of barley

Shetty, Radhakrishna ; Zhuang, Shiwen ; Hansen, Preben Bøje ; Hobley, Timothy John
Presented at:
Sustain-ATV Conference 2016

Type: Conference abstract for conference (Peer reviewed)

Status: Published     |    År: 2016

2015
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Adaptation of Lactococcus lactis to high growth temperature leads to a dramatic increase in acidification rate

Chen, Jun ; Shen, Jing ; Hellgren, Lars ; Jensen, Peter Ruhdal ; Solem, Christian
in: Scientific Reports, vol: 5

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: https://doi.org/10.1038/srep14199

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A New Type of YumC-Like Ferredoxin (Flavodoxin) Reductase Is Involved in Ribonucleotide Reduction

Chen, Jun ; Shen, Jing ; Solem, Christian ; Jensen, Peter Ruhdal
in: mBio (Online), vol: 6, issue: 6

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: https://doi.org/10.1128/mbio.01132-15

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Brewing with 100% unmalted grains

Zhuang, Shiwen ; Shetty, Radhakrishna ; Hansen, Mikkel ; Hansen, Preben Bøje ; Hobley, Timothy John
part of: Book of Abstracts. DTU's Sustain Conference 2015, 2015, Technical University of Denmark, Lyngby
Presented at:
DTU Sustain Conference 2015

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2015

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High-level ethanol production by metabolically engineered Lactococcus lactis using economically renewable feedstocks

Liu, Jianming ; Solem, Christian ; Jensen, Peter Ruhdal
part of: Book of Abstracts. DTU's Sustain Conference 2015, 2015, Technical University of Denmark, Lyngby
Presented at:
DTU Sustain Conference 2015

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2015

 

Increased expression of pyruvate carboxylase and biotin protein ligase increases lysine production in a biotin prototrophic Corynebacterium glutamicum strain

Wang, Zhihao ; Moslehi-Jenabian, Soloomeh ; Solem, Christian ; Jensen, Peter Ruhdal
in: Engineering in Life Sciences (Online), vol: 15, issue: 1, pages: 73–82

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: https://doi.org/10.1002/elsc.201400185

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Regulation of microRNAs miR-30a and miR-143 in cerebral vasculature after experimental subarachnoid hemorrhage in rats

Muller, Anne Holt ; Povlsen, Gro Klitgaard ; Bang-Berthelsen, Claus Heiner ; Kruse, Lars Schack ; Nielsen, Janne ; Warfvinge, Karin ; Edvinsson, Lars
in: B M C Genomics, vol: 16, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: https://doi.org/10.1186/s12864-015-1341-7

 

Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation

Cockburn, Darrell ; Nielsen, Morten M. ; Christiansen, Camilla ; Andersen, Joakim Mark ; Rannes, Julie Bille ; Blennow, Andreas ; Svensson, Birte
in: International Journal of Biological Macromolecules, vol: 75, pages: 338-345

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: https://doi.org/10.1016/j.ijbiomac.2015.01.054

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Transcriptomic landscape of lncRNAs in inflammatory bowel disease

Mirza, Aashiq H. ; Bang-Berthelsen, Claus Heiner ; Seemann, Stefan E. ; Pan, Xiaoyong ; Frederiksen, Klaus S. ; Vilien, Mogens ; Gorodkin, Jan ; Pociot, Flemming
in: Genome Medicine, vol: 7, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2015     |    DOI: https://doi.org/10.1186/s13073-015-0162-2

2014
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Pore roller filtration apparatus

Stubbe, Peter Reimer ; Hansen, Preben Bøje
Patent no.: WO2014198907 , Date: 2014-12-18

Type: Patent

Status: Published     |    År: 2014

  PDF

Acetate Kinase Isozymes Confer Robustness in Acetate Metabolism

Chan, Siu Hung Joshua ; Nørregaard, Lasse ; Solem, Christian ; Jensen, Peter Ruhdal
in: PLOS ONE, vol: 9, issue: 3

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1371/journal.pone.0092256

 

Circulating MicroRNAs in Plasma of Hepatitis B e Antigen Positive Children Reveal Liver-Specific Target Genes

Winther, Thilde Nordmann ; Jacobsen, Kari Stougaard ; Mirza, Aashiq Hussain ; Heiberg, Ida Louise ; Bang-Berthelsen, Claus Heiner ; Pociot, Flemming ; Hogh, Birthe
in: International Journal of Hepatology, vol: 2014

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1155/2014/791045

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CTSH regulates β-cell function and disease progression in newly diagnosed type 1 diabetes patients

Flyøel, Tina ; Brorsson, Caroline ; Nielsen, Lotte B. ; Miani, Michela ; Bang-Berthelsen, Claus Heiner ; Friedrichsen, Martin ; Overgaard, Anne Julie ; Berchtold, Lukas A. ; Wiberg, Anna ; Poulsen, Pernille ; Hansen, Lars ; Rosinger, Silke ; Boehm, Bernhard O. ; Ram, Ramesh ; Nguyen, Quang ; Mehta, Munish ; Morahan, Grant ; Concannon, Patrick ; Bergholdt, Regine ; Nielsen, Jens H. ; Reinheckel, Thomas ; Von Herrath, Matthias ; Vaag, Allan ; Eizirik, Decio Laks ; Mortensen, Henrik B. ; Strøling, Joachim ; Pociot, Flemming
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 111, issue: 28, pages: 10305-10310

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1073/pnas.1402571111

 

Development of droplets‐based microfluidic systems for single­‐cell high‐throughput screening

Chen, Jun ; Jensen, Thomas Glasdam ; Godina, Alexei ; Solem, Christian ; Dufva, Martin ; Jensen, Peter Ruhdal
part of: Abstract Book - DTU Sustain Conference 2014, 2014, Technical University of Denmark, Kgs. Lyngby
Presented at:
DTU Sustain Conference 2014

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2014

 

Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property

Chan, Siu Hung Joshua ; Solem, Christian ; Jensen, Peter Ruhdal ; Ji, P.
in: Bioinformatics, vol: 30, issue: 22, pages: 3232-3239

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1093/bioinformatics/btu529

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Genetic versus Non-Genetic Regulation of miR-103, miR-143 and miR-483-3p Expression in Adipose Tissue and Their Metabolic Implications-A Twin Study

Bork-Jensen, Jette ; Thuesen, Anne Cathrine Baun ; Bang-Berthelsen, Claus Heiner ; Grunnet, Louise Groth ; Pociot, Flemming ; Beck-Nielsen, Henning ; Ozanne, Susan E. ; Poulsen, Pernille ; Vaag, Allan
in: Genes, vol: 5, issue: 3, pages: 508-517

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.3390/genes5030508

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Identification of Metabolic Pathways Essential for Fitness of Salmonella Typhimurium In Vivo

Jelsbak, Lotte ; Hartman, Hassan ; Schroll, Casper ; Rosenkrantz, Jesper Tjørnholt ; Lemire, Sebastien ; Wallrodt, Inke ; Thomsen, Line Elnif ; Poolman, Mark ; Kilstrup, Mogens ; Jensen, Peter Ruhdal ; Olsen, John E.
in: P L o S One, vol: 9, issue: 7

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1371/journal.pone.0101869

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Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation

Hartman, Hassan B. ; Fell, David A. ; Rossell, Sergio ; Jensen, Peter Ruhdal ; Woodward, Martin J. ; Thorndahl, Lotte ; Jelsbak, Lotte ; Elmerdahl Olsen, John ; Raghunathan, Anu ; Daefler, Simon ; Poolman, Mark G.
in: Microbiology, vol: 160, issue: 6, pages: 1252-1266

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1099/mic.0.076091-0

 

Immobilization of cellulase mixtures on magnetic particles for hydrolysis of lignocellulose and ease of recycling

Alftrén, Johan ; Hobley, Timothy John
in: Biomass and Bioenergy, vol: 65, pages: 72-78

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1016/j.biombioe.2014.03.009

 

Microbial production of lysine from sustainable feedstock

Wang, Zhihao ; Grishkova, Maria ; Solem, Christian ; Jensen, Peter Ruhdal
part of: Abstract Book - DTU Sustain Conference 2014, 2014, Technical University of Denmark, Kgs. Lyngby
Presented at:
DTU Sustain Conference 2014

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2014

 

miRNA profiles in cerebrospinal fluid from patients with central hypersomnias

Holm, Anja ; Bang-Berthelsen, Claus Heiner ; Knudsen, Stine ; Modvig, Signe ; Kornum, Birgitte Rahbek ; Gammeltoft, Steen ; Jennum, Poul J.
in: Journal of the Neurological Sciences, vol: 347, issue: 1-2, pages: 199-204

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1016/j.jns.2014.09.047

 

miRNA Profiles in Plasma from Patients with Sleep Disorders Reveal Dysregulation of miRNAs in Narcolepsy and Other Central Hypersomnias

Holm, Anja ; Bang-Berthelsen, Claus Heiner ; Knudsen, Stine ; Kornum, Birgitte R. ; Modvig, Signe ; Jennum, Poul ; Gammeltoft, Steen
in: Sleep, vol: 37, issue: 9, pages: 1525-1533

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.5665/sleep.4004

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Polyamines are essential for virulence in Salmonella enterica serovar Gallinarum despite evolutionary decay of polyamine biosynthesis genes

Schroll, Casper ; Christensen, Jens P. ; Christensen, Henrik ; Pors, Susanne E. ; Thorndahl, Lotte ; Jensen, Peter Ruhdal ; Olsen, John E. ; Jelsbak, Lotte
in: Veterinary Microbiology, vol: 170, issue: 1-2, pages: 144-150

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1016/j.vetmic.2014.01.034

 

Processing of biowaste for sustainable products in developing countries

Dantoft, Shruti Harnal ; Hansen, Anders Cai Holm ; Jensen, Peter Ruhdal
part of: Abstract Book - DTU Sustain Conference 2014, 2014, Technical University of Denmark, Kgs. Lyngby
Presented at:
DTU Sustain Conference 2014

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published     |    År: 2014

 

Recent insight in α-glucan metabolism in probiotic bacteria

Møller, Marie Sofie ; Goh, Yong Jun ; Viborg, Alexander Holm ; Andersen, Joakim Mark ; Klaenhammer, Todd R. ; Svensson, Birte ; Abou Hachem, Maher
in: Biologia, vol: 69, issue: 6, pages: 713-721

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.2478/s11756-014-0367-7

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Screening of lactic acid bacteria for their potential as microbial cell factories for bioconversion of lignocellulosic feedstocks

Boguta, Anna Monika ; Bringel, Francoise ; Martinussen, Jan ; Jensen, Peter Ruhdal
in: Microbial Cell Factories, vol: 13, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1186/s12934-014-0097-0

 

Spatially conserved regulatory elements identified within human and mouse Cd247 gene using high-throughput sequencing data from the ENCODE project

Pundhir, Sachin ; Hannibal, Tine Dahlbaek ; Bang-Berthelsen, Claus Heiner ; Wegener, Anne-Marie Karin ; Pociot, Flemming ; Holmberg, Dan ; Gorodkin, Jan
in: Gene, vol: 545, issue: 1, pages: 80-87

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1016/j.gene.2014.05.004

 

Synthetic promoter libraries for Corynebacterium glutamicum

Rytter, Jakob Vang ; Helmark, Søren ; Chen, Jun ; Lezyk, Mateusz Jakub ; Solem, Christian ; Jensen, Peter Ruhdal
in: Applied Microbiology and Biotechnology, vol: 98, issue: 6, pages: 2617-2623

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1007/s00253-013-5481-x

 

Temporal profiling of cytokine-induced genes in pancreatic β-cells by meta-analysis and network inference

Lopes, Miguel ; Kutlu, Burak ; Miani, Michela ; Bang-Berthelsen, Claus Heiner ; Størling, Joachim ; Pociot, Flemming ; Goodman, Nathan ; Hood, Lee ; Welsh, Nils ; Bontempi, Gianluca ; Eizirik, Decio L.
in: Genomics, vol: 103, issue: 4, pages: 264-275

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1016/j.ygeno.2013.12.007

 

Use of Continuous Magnetic Extraction for removal of feedstock contaminants in flow-through mode

Paulus, Anja ; Fischer, Ingo ; Hobley, Timothy John ; Franzreb, Matthias
in: Separation and Purification Technology, vol: 127, pages: 174-180

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1016/j.seppur.2014.02.041

2013
 

A snapshot into the metabolism of isomalto-oligosaccharides in probiotic bacteria

Abou Hachem, Maher ; Møller, Marie Sofie ; Andersen, Joakim Mark ; Fredslund, Folmer ; Majumder, Avishek ; Nakai, Hiroyuki ; Leggio, Leila lo ; Goh, Yong-Jun ; Barrangou, R. ; Klaenhammer, Todd R. ; Svensson, Birte
in: Journal of Applied Glycoscience, vol: 60, issue: 2, pages: 95-100

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.5458/jag.jag.JAG-2012_022

 

Complete Genome Sequence of Pediococcus pentosaceus Strain SL4

Dantoft, Shruti Harnal ; Bielak, Eliza Maria ; Seo, Jae-Gu ; Chung, Myung-Jun ; Jensen, Peter Ruhdal
in: Genome Announcements, vol: 1, issue: 6

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1128/genomeA.01106-13

 

Covalent Immobilization of β-Glucosidase on Magnetic Particles for Lignocellulose Hydrolysis

Alftrén, Johan ; Hobley, Timothy John
in: Applied Biochemistry and Biotechnology, vol: 169, issue: 7, pages: 2076-2087

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1007/s12010-013-0122-5

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Differential Plasma MicroRNA Profiles in HBeAg Positive and HBeAg Negative Children with Chronic Hepatitis B

Winther, Thilde Nordmann ; Bang-Berthelsen, Claus Heiner ; Heiberg, Ida Louise ; Pociot, Flemming ; Hogh, Birthe
in: P L o S One, vol: 8, issue: 3

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1371/journal.pone.0058236

 

Do post-translational beta cell protein modifications trigger type 1 diabetes?

Storling, Joachim ; Overgaard, Anne Julie ; Brorsson, Caroline Anna ; Piva, Francesco ; Bang-Berthelsen, Claus Heiner ; Haase, Claus ; Nerup, Jorn ; Pociot, Flemming
in: Diabetologia, vol: 56, issue: 11, pages: 2347-2354

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1007/s00125-013-3045-3

 

Engineering strategies aimed at control of acidification rate of lactic acid bacteria

Martinussen, Jan ; Solem, Christian ; Holm, Anders Koefoed ; Jensen, Peter Ruhdal
in: Current Opinion in Biotechnology, vol: 24, issue: 2, pages: 124-129

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1016/j.copbio.2012.11.009

 

Filtering apparatus and method for mixing, extraction and/or separation

Stubbe, Peter Reimer ; Hansen, Preben Bøje
Patent no.: WO2013024065 , Date: 2013-02-21

Type: Patent

Status: Published     |    År: 2013

  PDF

Hepatitis B Surface Antigen Quantity Positively Correlates with Plasma Levels of microRNAs Differentially Expressed in Immunological Phases of Chronic Hepatitis B in Children

Winther, Thilde Nordmann ; Heiberg, Ida Louise ; Bang-Berthelsen, Claus Heiner ; Pociot, Flemming ; Hogh, Birthe ; Blackard, Jason (Editor)
in: P L o S One, vol: 8, issue: 11

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1371/journal.pone.0080384

 

In vitro growth of four individual human gut bacteria on oligosaccharides produced by chemoenzymatic synthesis.

Vigsnæs, Louise Kristine ; Nakai, Hiroyuki ; Hemmingsen, Lene ; Andersen, Joakim Mark ; Lahtinen, Sampo J ; Rasmussen, Louise Enggaard ; Abou Hachem, Maher ; Petersen, Bent O. ; Duus, Jens Øllgaard ; Meyer, Anne S. ; Licht, Tine Rask ; Svensson, Birte
in: Food & Function, vol: 4, issue: 5, pages: 784-793

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2013     |    DOI: https://doi.org/10.1039/C3FO30357H


https://www.food.dtu.dk/forskning/mikrobiel-bioteknologi-og-bioraffinering/publikationer?dtulistcode=National%20Food%20Instit-33437&fr=1&mr=100&ptype=all&qt=DtuPublicationQuery
13 NOVEMBER 2019