Thomas Nordahl Petersen

Thomas Nordahl Petersen

Lektor

DTU FØDEVAREINSTITUTTET
DTU Fødevareinstituttet

Forskningsgruppen for Genetisk Epidemiologi

Danmarks Tekniske Universitet

Kemitorvet

Bygning 204, rum 105

2800 Kgs. Lyngby

Hjemmeside

Få tilsendt vCard på e-mail.

Publikationer
Projekter
Loading

Publikationer rss feed

2019
  PDF

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, Rene S. ; Munk, Patrick ; Njage, Patrick Murigu Kamau ; van Bunnik, Bram ; McNally, Luke ; Lukjancenko, Oksana ; Röder, Timo ; Nieuwenhuijse, David ; Karlsmose Pedersen, Susanne ; Kjeldgaard, Jette Sejer ; Kaas, Rolf Sommer ; Clausen, Philip Thomas Lanken Conradsen ; Vogt, Josef Korbinian ; Leekitcharoenphon, Pimlapas ; van de Schans, Milou G M ; Zuidema, Tina ; de Roda Husman, Ana Maria ; Rasmussen, Simon ; Petersen, Bent ; Global, Sewage Surveillance project consortium ; Amid, Clara ; Cochrane, Guy ; Sicheritz-Pontén, Thomas ; Schmitt, Heike ; Alvarez, Jorge Raul Matheu ; Aidara-Kane, Awa ; Pamp, Sünje Johanna ; Lund, Ole ; Hald, Tine ; Woolhouse, Mark ; Koopmans, Marion P ; Vigre, Håkan ; Petersen, Thomas Nordahl ; Aarestrup, Frank Møller
in: Nature Communications, vol: 10

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41467-019-08853-3

  PDF

Proficiency testing of virus diagnostics based on bioinformatics analysis of simulated in silico high-throughput sequencing datasets

Brinkmann, Annika ; Andrusch, Andreas ; Belka, Ariane ; Wylezich, Claudia ; Höper, Dirk ; Pohlmann, Anne ; Petersen, Thomas Nordahl ; Lucas, Pierrick ; Blanchard, Yannick ; Papa, Anna ; Melidou, Angeliki ; Oude Munnink, Bas B ; Matthijnssens, Jelle ; Deboutte, Ward ; Ellis, Richard J ; Hansmann, Florian ; Baumgärtner, Wolfgang ; van der Vries, Erhard ; Osterhaus, Albert ; Camma, Cesare ; Mangone, Iolanda ; Lorusso, Alessio ; Maracci, Maurilia ; Nunes, Alexandra ; Pinto, Miguel ; Borges, Vítor ; Kroneman, Annelies ; Schmitz, Dennis ; Corman, Victor Max ; Drosten, Christian ; Jones, Terry C ; Hendriksen, Rene S. ; Aarestrup, Frank Møller ; Koopmans, Marion ; Beer, Martin ; Nitsche, Andreas
in: Journal of Clinical Microbiology, vol: 57, issue: 8

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1128/JCM.00466-19

  PDF

SignalP 5.0 improves signal peptide predictions using deep neural networks

Almagro Armenteros, Jose Juan ; Tsirigos, Konstantinos D. ; Sønderby, Casper Kaae ; Petersen, Thomas Nordahl ; Winther, Ole ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in: Nature Biotechnology, vol: 37, pages: 420-423

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41587-019-0036-z

2018
  PDF

Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

Munk, Patrick ; Knudsen, Berith Elkær ; Lukjacenko, Oksana ; Duarte, Ana Sofia Ribeiro ; Van Gompel, Liese ; Luiken, Roosmarijn E.C. ; Smit, Lidwien A.M. ; Schmitt, Heike ; Garcia, Alejandro Dorado ; Hansen, Rasmus Borup ; Petersen, Thomas Nordahl ; Bossers, Alex ; Ruppé, Etienne ; Graveland, Haitske ; van Essen, Alieda ; Gonzalez-Zorn, Bruno ; Moyano, Gabriel ; Sanders, Pascal ; Chauvin, Claire ; David, Julie ; Battisti, Antonio ; Caprioli, Andrea ; Dewulf, Jeroen ; Blaha, Thomas ; Wadepohl, Katharina ; Brandt, Maximiliane ; Wasyl, Dariusz ; Skarzyńska, Magdalena ; Zajac, Magdalena ; Daskalov, Hristo ; Saatkamp, Helmut W. ; Stärk, Katharina D.C. ; Lund, Ole ; Hald, Tine ; Pamp, Sünje Johanna ; Vigre, Håkan ; Heederik, Dick ; Wagenaar, Jaap A. ; Mevius, Dik ; Møller Aarestrup, Frank ; ,
in: Nature Microbiology, vol: 3, issue: 8, pages: 898-908

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1038/s41564-018-0192-9

2017
  PDF

Norgal: Extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

Al-Nakeeb, Kosai Ali Ahmed ; Petersen, Thomas Nordahl ; Sicheritz-Pontén, Thomas
in: B M C Bioinformatics, vol: 18, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1186/s12859-017-1927-y

  PDF

Protein features as determinants of wild-type glycoside hydrolase thermostability

Geertz-Hansen, Henrik Marcus ; Kiemer, Lars ; Nielsen, Morten ; Stanchev, Kiril ; Blom, Nikolaj ; Brunak, Søren ; Petersen, Thomas Nordahl
in: Proteins: Structure, Function, and Bioinformatics, vol: 85, issue: 11, pages: 2036-2044

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1002/prot.25357

 

The CGE Tool Box

Larsen, Mette Voldby ; Joensen, Katrine Grimstrup ; Zankari, Ea ; Ahrenfeldt, Johanne ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Roer, Louise ; Leekitcharoenphon, Pimlapas ; Saputra, Dhany ; Cosentino, S. ; Thomsen, Martin Christen Frølund ; Bellod Cisneros, Jose Luis ; Jurtz, Vanessa Isabell ; Rasmussen, Simon ; Petersen, Thomas Nordahl ; Hasman, Henrik ; Sicheritz-Pontén, Thomas ; Aarestrup, Frank Møller ; Lund, Ole
part of: Applied Genomics of Foodborne Pathogens, pages: 65-90, 2017, Springer, Switzerland

Type: Book chapter (Peer reviewed)

Status: Published     |    År: 2017     |    DOI: https://doi.org/10.1007/978-3-319-43751-4_5

2015
2014
 

Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds

Geertz-Hansen, Henrik Marcus ; Blom, Nikolaj ; Feist, Adam ; Brunak, Søren ; Petersen, Thomas Nordahl
in: Proteins: Structure, Function, and Bioinformatics, vol: 82, issue: 9, pages: 1819-1828

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2014     |    DOI: https://doi.org/10.1002/prot.24536


https://www.food.dtu.dk/forskning/genetisk-epidemiologi/publikationer/person?id=24435&tab=2&qt=dtupublicationquery
10 DECEMBER 2019